There are a multitude of different strains of bacteria, some are beneficial while others are harmful. For example the type that are in the biological filter of your aquarium are very beneficial because they process ammonia (which is toxic to your fish) first into nitrite and then into nitrate that is removed with water exchange. These types of bacteria do not harm your fish in any way.
Discus do not have a very strong immune system, so the objective is to reduce the number pathogens (bacteria, virus, parasites, and fungus) existing in the aquarium. One way to accomplish this is to reduce the available food supply of the pathogens. The food supply exists in two forms: uneaten fish food and feces. That's why tank maintenance is important.
The bacteria in Pristine is of the beneficial type. They do not displace harmful types, but they are beneficial because they reduce the food source by making the food dissolve into the water column where it can be removed by water exchange.
Paul