Harriett,
I have an eheim 2215 and I'm not really sure of what you're referring to. I noticed someone mentioned a 2213 which I hear is setup slightly differently but.
Whenever I clean my eheims ( I have numerous models) I always leave both hoses full by simply disconnect them using the double tap connectors. If you don't have double tap connectors several online stores will sell them to you.
After I clean the filter, I always fill it BEFORE I hook it back up to the system. Actually, I slightly overfill the cannister before putting the motor back on top, wrap it in a towel, then slowly push the head down. Leaving the connector on the output hose open during this operation bleeds some of the excess water out the hose but some will still leak out the sides as the moter assy displaces the water. Immediately close the valve on the connector once the head is all the way down and attach the clips without letting up pressure on the motor assy - this way you almost completely reduce air bubbles inside the cannister.
Carry the full cannister back to the tank, reconnect the hoses with the double tap connectors - I open in the intake hose valves first, then the output, then start the motor. Always shoots a stream of very fine bubbles out the spraybar but always starts without problems this way.
Never have to restart the syphon to prime prime the system since by keeping the valve on the hose connector closed, the intake tube and hose stay full and maintain the syphon while you're doing your cleaning - you never lose the syphon to begin with.
If you do have an air in the cannister problem, slowly roll the cannister on it's base from side to side and the air will clear out very quickly.
good luck
Jim
PS. Read someone above say you should always connect with the cannister empty - why make your life miserable? Are your cannisters so old they didn't come with double tap connectors?
Also - use silicone lube on the gasket occassionally - lasts longer and easier to seat / unseat the motor assy>